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Year Number of Results
2020 68
2021 173
2022 106
2023 55
2024 14

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385 results

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Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania.
Mziray SR, van Zwetselaar M, Kayuki CC, Mbelele PM, Makubi AN, Magesa AS, Kisonga RM, Sonda TB, Kibiki GS, Githinji G, Heysell SK, Chilongola JO, Mpagama SG. Mziray SR, et al. Front Med (Lausanne). 2023 Jan 4;9:1034682. doi: 10.3389/fmed.2022.1034682. eCollection 2022. Front Med (Lausanne). 2023. PMID: 36687433 Free PMC article.
Paucity of SARS-CoV-2 genetic data from Tanzania challenges in-country tracking of the pandemic. ...Viral genomic libraries were prepared using ARTIC nCoV-2019 sequencing protocol version three. Whole-genome sequencing (WGS) was pe …
Paucity of SARS-CoV-2 genetic data from Tanzania challenges in-country tracking of the pandemic. ...Viral genomic libra …
Whole-genome sequencing of SARS-CoV-2 reveals the detection of G614 variant in Pakistan.
Umair M, Ikram A, Salman M, Khurshid A, Alam M, Badar N, Suleman R, Tahir F, Sharif S, Montgomery J, Whitmer S, Klena J. Umair M, et al. PLoS One. 2021 Mar 23;16(3):e0248371. doi: 10.1371/journal.pone.0248371. eCollection 2021. PLoS One. 2021. PMID: 33755704 Free PMC article.
Since its emergence in China, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread worldwide including Pakistan. During the pandemic, whole genome sequencing has played an important role in understanding the evolution a …
Since its emergence in China, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread worldwide includi …
Whole-genome Sequencing of SARS-CoV-2: Using Phylogeny and Structural Modeling to Contextualize Local Viral Evolution.
Nazario-Toole AE, Xia H, Gibbons TF. Nazario-Toole AE, et al. Mil Med. 2022 Jan 4;187(1-2):e130-e137. doi: 10.1093/milmed/usab031. Mil Med. 2022. PMID: 33609027 Free PMC article.
INTRODUCTION: The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has created a global pandemic resulting in over 1 million deaths worldwide. ...We identified 109 nucleotide changes in the coding region of the SARS-CoV- …
INTRODUCTION: The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has created a global pandemi …
Whole Genome Sequencing and Phylogenetic Analysis of SARS-CoV-2 strains in Turkey.
Tokgun O, Caliskan A, Coskun C, Tokgun PE, Akca H. Tokgun O, et al. J Infect Dev Ctries. 2021 Apr 30;15(4):470-477. doi: 10.3855/jidc.14560. J Infect Dev Ctries. 2021. PMID: 33956645 Free article.
We aimed to reveal the complete genomes of 19 SARS-CoV-2 isolates from Denizli province and identify Turkish patients' genetic similarities. ...Phylogenetic trees were constructed by the Neighbor-Joining method using MEGAX software. RESULTS: Whole …
We aimed to reveal the complete genomes of 19 SARS-CoV-2 isolates from Denizli province and identify Turkish pat …
Investigation of intra-hospital SARS-CoV-2 transmission using nanopore whole-genome sequencing.
Løvestad AH, Jørgensen SB, Handal N, Ambur OH, Aamot HV. Løvestad AH, et al. J Hosp Infect. 2021 May;111:107-116. doi: 10.1016/j.jhin.2021.02.022. Epub 2021 Feb 26. J Hosp Infect. 2021. PMID: 33647375 Free PMC article.
BACKGROUND: During the SARS-CoV-2 pandemic, healthcare workers (HCWs) are being exposed to infection both at work and in their communities. ...AIM: To determine whether clusters of suspected intra-hospital SARS-CoV-2 transmission could be …
BACKGROUND: During the SARS-CoV-2 pandemic, healthcare workers (HCWs) are being exposed to infection both at work and i …
Whole-genome sequencing of SARS-CoV-2 in Uganda: implementation of the low-cost ARTIC protocol in resource-limited settings.
Mboowa G, Mwesigwa S, Kateete D, Wayengera M, Nasinghe E, Katagirya E, Katabazi AF, Kigozi E, Kirimunda S, Kamulegeya R, Kabahita JM, Luutu MN, Nabisubi P, Kanyerezi S, Bagaya BS, Joloba ML. Mboowa G, et al. F1000Res. 2021 Jul 19;10:598. doi: 10.12688/f1000research.53567.1. eCollection 2021. F1000Res. 2021. PMID: 34457243 Free PMC article.
Background: In January 2020, a previously unknown coronavirus strain was identified as the cause of a severe acute respiratory syndrome (SARS-CoV-2). The first viral whole-genome was sequenced using high-throughput sequencing from a sampl …
Background: In January 2020, a previously unknown coronavirus strain was identified as the cause of a severe acute respiratory syndrome ( …
SARS-CoV-2 Outbreak Investigation Using Contact Tracing and Whole-Genome Sequencing in an Ontario Tertiary Care Hospital.
Tsang KK, Ahmad S, Aljarbou A, Al Salem M, Baker SJC, Panousis EM, Derakhshani H, Rossi L, Nasir JA, Bulir DC, Surette MG, Lee RS, Smaill F, Mertz D, McArthur AG, Khan S. Tsang KK, et al. Microbiol Spectr. 2023 Jun 15;11(3):e0190022. doi: 10.1128/spectrum.01900-22. Epub 2023 Apr 24. Microbiol Spectr. 2023. PMID: 37093060 Free PMC article.
Genomic epidemiology can facilitate an understanding of evolutionary history and transmission dynamics of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreak. We used next-generation sequencing techniques to study SARS-CoV …
Genomic epidemiology can facilitate an understanding of evolutionary history and transmission dynamics of a severe acute respiratory syndrom …
SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 antigen self tests.
Nguyen PV, Carmola LR, Wang E, Bassit L, Rao A, Greenleaf M, Sullivan JA, Martin GS, Lam WA, Waggoner JJ, Piantadosi A. Nguyen PV, et al. J Clin Virol. 2023 May;162:105426. doi: 10.1016/j.jcv.2023.105426. Epub 2023 Mar 24. J Clin Virol. 2023. PMID: 37028004 Free PMC article.
As an alternative sample source, we evaluated RNA isolated from BinaxNOW swabs stored at ambient temperature for SARS-CoV-2 rRT-PCR and full viral genome sequencing. 81 of 103 samples (78.6%) yielded detectable RNA, and 46 of 57 samples ( …
As an alternative sample source, we evaluated RNA isolated from BinaxNOW swabs stored at ambient temperature for SARS-CoV …
Whole-genome sequencing of SARS-CoV-2 reveals diverse mutations in circulating Alpha and Delta variants during the first, second, and third waves of COVID-19 in South Kivu, east of the Democratic Republic of the Congo.
Ntagereka PB, Oyola SO, Baenyi SP, Rono GK, Birindwa AB, Shukuru DW, Baharanyi TC, Kashosi TM, Buhendwa JC, Bisimwa PB, Kusinza AB, Basengere RA, Mukwege D. Ntagereka PB, et al. Int J Infect Dis. 2022 Sep;122:136-143. doi: 10.1016/j.ijid.2022.05.041. Epub 2022 May 20. Int J Infect Dis. 2022. PMID: 35598737 Free PMC article.
OBJECTIVES: We used whole-genome sequencing of SARS-CoV-2 to identify variants circulating in the Democratic Republic of the Congo and obtain molecular information useful for diagnosis, improving treatment, and general pandemic control st …
OBJECTIVES: We used whole-genome sequencing of SARS-CoV-2 to identify variants circulating in the …
Deployment of whole genome next-generation sequencing of SARS-CoV-2 in a military maritime setting.
Bosworth A, Robson J, Lawrence B, Casey AL, Fair A, Khanam S, Hudson C, O'Shea MK. Bosworth A, et al. BMJ Mil Health. 2023 Feb 9:e002296. doi: 10.1136/military-2022-002296. Online ahead of print. BMJ Mil Health. 2023. PMID: 36759003
Whole genome sequencing (WGS) of SARS-CoV-2 has facilitated epidemiological investigations of outbreaks, impacting on outbreak management in real time by identifying transmission patterns, clusters of infection and guiding control measure …
Whole genome sequencing (WGS) of SARS-CoV-2 has facilitated epidemiological investigations of outb …
385 results